Scaffold P_A23_Sed_1_FmtDRAFT_1005025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_A23_Sed_1_FmtDRAFT_1005025

Scaffold P_A23_Sed_1_FmtDRAFT_1005025

Overview

Basic Information
Taxon OID	3300000511 Open in IMG/M
Scaffold ID	P_A23_Sed_1_FmtDRAFT_1005025 Open in IMG/M
Source Dataset Name	Marine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1422
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Alviso Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.475383	Long. (^o)	-121.9729	Alt. (m)		Depth (m)	.09
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038111	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
P_A23_Sed_1_FmtDRAFT_10050251	F038111	N/A	PCPSFYYEAMIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLNLLANLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ*

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