Scaffold Lynggard_1016271

Overview

Basic Information

• Taxon OID: 3300000482
• Scaffold ID: Lynggard_1016271
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1993
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 56.446744
  • Long. (^o): 9.372697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014002	Metagenome / Metatranscriptome	266	Y
F027161	Metagenome / Metatranscriptome	195	Y
F030054	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Lynggard_10162711	F014002	N/A	EIIGIITLLIAIISGYVNIKIQITKLVEENKTLTEKINNLDKKLSEICSKVDKIKINLAKKGLNDNE*
Lynggard_10162712	F027161	AGGA	MNEYIRLIIDNLDVSYICSVMLLGYMITKSKLITKIKLQKRWIILIIGVIVAVIYYFFIKIRLDILFFSFITAQFLNLYVTEYLIDYLIKKLGSLTKKTN*
Lynggard_10162714	F030054	N/A	MNKREKKLFFVILVLLAAILFNIESIKKKNSIINTNKELINSYKERINNSNLAIDSLQNAIKQAKKVDTVIKIRYKQKIDSIYVYKYDDYISFYDTLLHTNLLKSDTFICFDSINIQKLTTKIVKCERDSELLANCYVENNLYNNIIKNQDSVILLQDSINTTLQTNCDKKVKKVKKQRNIAIGVAF