Scaffold Lynggard_1014138

Overview

Basic Information

• Taxon OID: 3300000482
• Scaffold ID: Lynggard_1014138
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3020
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 56.446744
  • Long. (^o): 9.372697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022893	Metagenome / Metatranscriptome	212	N
F023320	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Lynggard_10141382	F023320	GAGG	MKVYKALTFEVDLSGLGKEQWIQEELDYDTIAQKIIDTLIDVMREKDVEASSNLIQSLEPETKNGEIVIYADYYWKFIDKGVNGLMQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRVATATKIKGIRGRKFVEEFEKELDNIEII*
Lynggard_10141384	F022893	N/A	MKLKKAKKLTISYKVKVKHFEDFLLLCSYDKKDIDGFINLLSKCTEVDKEIFYNLKFADLIRFVDELVDSVDKEMYKAPKKAIKINDRYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDERNSSVDEREKIMQNADIIDYMRLANFFLTWRDFLKKLKEIQKN*