Scaffold Lynggard_1009989

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Lynggard_1009989

Scaffold Lynggard_1009989

Overview

Basic Information
Taxon OID	3300000482 Open in IMG/M
Scaffold ID	Lynggard_1009989 Open in IMG/M
Source Dataset Name	Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aalborg University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2780
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location
Location Name	Soeholt, Denmark
Coordinates	Lat. (^o)	56.446744	Long. (^o)	9.372697	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087243	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Lynggard_10099891	F087243	N/A	QERIALPEWWQQCTRNAAAEGLAPLLVLKQSRREPLAVLRWTDLLSLLRHDHRWENLAEGLTGGRP*

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