Scaffold Lynggard_1009058

Overview

Basic Information

• Taxon OID: 3300000482
• Scaffold ID: Lynggard_1009058
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3261
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 56.446744
  • Long. (^o): 9.372697

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045597	Metagenome / Metatranscriptome	152	Y
F093744	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Lynggard_10090584	F093744	AGGAGG	MPLRVGDRVEVSYPVDDFPGHVGIVREIKESTEFPGKIIVVCYWPFLDKEIAFFEDSLDLV*
Lynggard_10090585	F045597	AGGGGG	MKFDVHMVKPPTLISDSAGHGSRRTYAAVARVSRSSGGFMDVVAAYSRGYCDQHEEVESLDRLLGLLVVSAPVSNPRLTLAQFPEDLPTGWEDAWEAVEAAVLALPE*