NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SL_5KL_010_SEDDRAFT_10055460

Scaffold SL_5KL_010_SEDDRAFT_10055460


Overview

Basic Information
Taxon OID3300000477 Open in IMG/M
Scaffold IDSL_5KL_010_SEDDRAFT_10055460 Open in IMG/M
Source Dataset NameAlkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)911
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location NameRussia: Kulunda Steppe, Lake Bitter
CoordinatesLat. (o)51.4Long. (o)79.54Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066493Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
SL_5KL_010_SEDDRAFT_100554601F066493GGAGGMSDAREFDSGVVDVADELVQRHGTSGAIDRLQRRRQTSNDELQARCTEAIA

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