Scaffold SL_5KL_010_SEDDRAFT_10009687

Overview

Basic Information

• Taxon OID: 3300000477
• Scaffold ID: SL_5KL_010_SEDDRAFT_10009687
• Source Dataset Name: Alkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3811
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location

• Location Name: Russia: Kulunda Steppe, Lake Bitter
• Coordinates
  • Lat. (^o): 51.4
  • Long. (^o): 79.54

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_5KL_010_SEDDRAFT_1000968711	F015419	N/A	MKYEIKITDEAGNVSSYNLTCSSSDQPKNLNDFILDALRVSEDKRKLPFMIQCPNGLEVYPSIKMKFENYGSALLDDKLEAMHVTWRD*