NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SL_5KL_010_SEDDRAFT_10009687

Scaffold SL_5KL_010_SEDDRAFT_10009687


Overview

Basic Information
Taxon OID3300000477 Open in IMG/M
Scaffold IDSL_5KL_010_SEDDRAFT_10009687 Open in IMG/M
Source Dataset NameAlkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3811
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location NameRussia: Kulunda Steppe, Lake Bitter
CoordinatesLat. (o)51.4Long. (o)79.54Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015419Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
SL_5KL_010_SEDDRAFT_1000968711F015419N/AMKYEIKITDEAGNVSSYNLTCSSSDQPKNLNDFILDALRVSEDKRKLPFMIQCPNGLEVYPSIKMKFENYGSALLDDKLEAMHVTWRD*

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