Scaffold F12B_10098612

Overview

Basic Information

• Taxon OID: 3300000443
• Scaffold ID: F12B_10098612
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1011
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F002111	Metagenome / Metatranscriptome	592	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
F12B_100986121	F066970	N/A	VYLKHLSSLQFLTYVAFLAVALAAIWRLIPGKAPPVRTEPYSDDELGAH
F12B_100986122	F000280	GGAG	MAGRRLRPARPLFGYRDVGEDVRWSRRAVQRSWLILALMVVLWFAWTLTVFFIEPGLR*
F12B_100986123	F002111	GAGG	MAVAPPFVAYSSLTEALVPAAEWEDLYGSLQALKGHVQEYPGCQRFDVFVRVEGDGXXXXHCYTTWDTPGQLEAFLERGYTFERLLADFGSLDPERSLVMEKIF*