Scaffold P_2C_Liq_1_UnCtyDRAFT_1007069

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_2C_Liq_1_UnCtyDRAFT_1007069

Scaffold P_2C_Liq_1_UnCtyDRAFT_1007069

Overview

Basic Information
Taxon OID	3300000418 Open in IMG/M
Scaffold ID	P_2C_Liq_1_UnCtyDRAFT_1007069 Open in IMG/M
Source Dataset Name	Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3086
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.569167	Long. (^o)	-122.1019	Alt. (m)		Depth (m)	.13
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096901	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_1_UnCtyDRAFT_10070694	F096901	GAG	MWTLWIVSSVIGSAEPKYTRYAEYETAMSCHIEQAVVEVNFTQGETAFCEEG*

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