Scaffold P_2C_Sed_1_UnCtyDRAFT_100888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_2C_Sed_1_UnCtyDRAFT_100888

Scaffold P_2C_Sed_1_UnCtyDRAFT_100888

Overview

Basic Information
Taxon OID	3300000409 Open in IMG/M
Scaffold ID	P_2C_Sed_1_UnCtyDRAFT_100888 Open in IMG/M
Source Dataset Name	Marine sediment microbial community from Union City, CA, USA - Pond 2C Sediment 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1493
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.569167	Long. (^o)	-122.1019	Alt. (m)		Depth (m)	.13
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052283	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Sed_1_UnCtyDRAFT_1008882	F052283	AGGAGG	MNSRQKSVFTGAILGAALGAVGGYLFTRGLDLSREGREQPDELSLKSVPPGEMVKVFIAIMAVLRGIAELGERL*

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