Scaffold BB_Man_B_Liq_inBBDRAFT_1000105

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1000105
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13664
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (44.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036676	Metagenome	169	Y
F040005	Metagenome / Metatranscriptome	162	N
F041163	Metagenome / Metatranscriptome	160	Y
F043838	Metagenome	155	N
F068613	Metagenome / Metatranscriptome	124	Y
F096928	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_100010518	F040005	N/A	VAYAAPLLHAIMEFTFNSKSLDRQVTLHEIHQLSTEEARKLHAELVIAVQAMDDKVNEAQIAAQASGIPADKDWIHRVKKKRRICVAFATQVKTLMDSAQPTTQPASFQGAYMRRLEELLLEELGATVYDEIKAEARDLALADLGAPVLGA*
BB_Man_B_Liq_inBBDRAFT_10001052	F036676	N/A	VIERHLTTIGAVLAVLTAIVGTTIAVETRYAKSAEVKAQLEEYYAKQLKLRILEIDLKPQPTPSDRALRQYLLQELNKGNGSTR*
BB_Man_B_Liq_inBBDRAFT_100010520	F096928	N/A	MSEFEKMSVDEARSRIVRRSKTTPLREEILAMKAGDAISVSFYNMETGEGYKPTTIAQVVSQMSKDGELRYSMRKNTDGDGCYVMCIAKTPEDALRPKRGRKPKTQEAIS*
BB_Man_B_Liq_inBBDRAFT_10001053	F041163	N/A	MAVRAKGGTGRIEHQAGKPKLTRQGNGKRSKPRGTRKLRRGQGR*
BB_Man_B_Liq_inBBDRAFT_100010530	F068613	GGAGG	MSRRVSDLCAAVIAAWALAMIGIEAGAHHSPTHSGTQEVMRHD*
BB_Man_B_Liq_inBBDRAFT_100010531	F043838	AGG	MDWTEILARGGVAEPPGREAALRRMKELRPFTATLRSRSTQLLKTVRVEALDYSDALMKTRGLLAGHTLVRLAEGWA*