Scaffold P_2C_Liq_3_UnCtyDRAFT_100416

Overview

Basic Information

• Taxon OID: 3300000369
• Scaffold ID: P_2C_Liq_3_UnCtyDRAFT_100416
• Source Dataset Name: Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12928
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.568817
  • Long. (^o): -122.10315
  • Depth (m): .11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003440	Metagenome / Metatranscriptome	486	Y
F043624	Metagenome / Metatranscriptome	156	Y
F084310	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_3_UnCtyDRAFT_10041617	F084310	GAGG	MTPVETFEYKQLWKPGYTVRLHSDVVDRGKTWCKRVCERHQWSVTTWTANYEHTFHFEHQEHAEKFITAMGEYANQTN*
P_2C_Liq_3_UnCtyDRAFT_10041631	F043624	AGGA	MVNKIYKVEDIFEDIDGDPENVLMNIPEEVSEKMGWEPGDTLKIKIEKGVITITKVDDGQE*
P_2C_Liq_3_UnCtyDRAFT_10041637	F003440	N/A	MRYYLGQCEYKWTHANTDMEKLWVQRELGTELFKTIESNNWCWVLLRSSSISLPGDTYCRTMIYVDSNDDKLDTHFVLKYPQAKPLEQV*