Scaffold P_2C_Liq_3_UnCtyDRAFT_100297

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_2C_Liq_3_UnCtyDRAFT_100297

Scaffold P_2C_Liq_3_UnCtyDRAFT_100297

Overview

Basic Information
Taxon OID	3300000369 Open in IMG/M
Scaffold ID	P_2C_Liq_3_UnCtyDRAFT_100297 Open in IMG/M
Source Dataset Name	Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	14874
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.568817	Long. (^o)	-122.10315	Alt. (m)		Depth (m)	.11
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F066701	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_3_UnCtyDRAFT_1002975	F040106	GAGG	MTMQKSYCKQMRYSGPESLAPSDTDKFDVLIQMEVLAGCNHGCLGCFVDKNIDPAMNQQIIDRAKELADGVKRTGLNLREFVIGPTDFFTATNTESVLNNSTVQEIMREHTGARIAAPAKFDLATMERVQEIFDILDDENKFRREMIIEFIMPISRVSQMLDDDEYYNEVMSKVKFFKENTPKQMDWSWTLQASNVVGKKIDKETYNRIIQKSVNEYETIVEMNPAFSRANSEIVQRNNLFSWNEFLGKVIDEDNANQTVMSMANLYCNSINFIGITIVPGKDGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEQILERKNELVTKGINKSSKVKDCADCKFSVACANRLIFEAQESLNVNGCVLNKNVLDHYNPYDFTWNDDAMKKLGAA*
P_2C_Liq_3_UnCtyDRAFT_1002978	F066701	N/A	MLVHLNSTYAGYYSYEEDKSPTNIDFLRTEINLDILHGCSQQCPGCFIPRKNLTKADNLETLYNLLIKGSFYPDEITVGPTDIFDAENFDEIMNHPYMKKLYGISGVGFTSTLLQPYAEIRNKLDKIWSLYEGIHRVPDIDFKIVLDIDK

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