Scaffold P_2C_Liq_3_UnCtyDRAFT_100204

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P_2C_Liq_3_UnCtyDRAFT_100204

Scaffold P_2C_Liq_3_UnCtyDRAFT_100204

Overview

Basic Information
Taxon OID	3300000369 Open in IMG/M
Scaffold ID	P_2C_Liq_3_UnCtyDRAFT_100204 Open in IMG/M
Source Dataset Name	Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	18045
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (30.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.568817	Long. (^o)	-122.10315	Alt. (m)		Depth (m)	.11
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023291	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_3_UnCtyDRAFT_10020413	F023291	N/A	MNIDKVYIPFESKWKRIGISLSGGADSALLAYLILRNSNADIYFTTQVRMWKTRPWQRWIAKDVVSWFKEKFDNRIEHIEGFIPPELEEPTEYLVKDEYGAFKPGNRIILRAHNEYIGNMYKLDAWYAGVTLNPTEEFEGKLNDRDDASLPIEMRHMDATICHPFVNVRKDWIIKQYMNFEIGELLEITRSCEGEFEDLDYTNYTPYQHVPICGECFWCKEREWGIQNALK*

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