Scaffold P_2C_Liq_3_UnCtyDRAFT_100120

Overview

Basic Information

• Taxon OID: 3300000369
• Scaffold ID: P_2C_Liq_3_UnCtyDRAFT_100120
• Source Dataset Name: Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22391
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.568817
  • Long. (^o): -122.10315
  • Depth (m): .11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F040050	Metagenome / Metatranscriptome	162	Y
F041087	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_3_UnCtyDRAFT_10012010	F041087	AGGAGG	MDLWDKVCEQIERDINDPLNDLQALYLMLQQVPKDVLIAYLPEEESADVG*
P_2C_Liq_3_UnCtyDRAFT_10012018	F040050	AGGA	MSKLKQRADDMNDLFEIVEDLKDIDTFGSDTTAFEDIFHKWNARLIDAQEEAERQYELFEMDDGA*
P_2C_Liq_3_UnCtyDRAFT_10012031	F001588	GAGG	MQNTTTKTNNVFLTAANAAIAVHVNNTVVATDVQTADALVQVFLTHNINVLTDVIMCSSSIDFAEEEGFASDASAHNIIDEALEALA*