Scaffold INPhiseqgaiiFebDRAFT_100509089

Overview

Basic Information

• Taxon OID: 3300000364
• Scaffold ID: INPhiseqgaiiFebDRAFT_100509089
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1344
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001831	Metagenome / Metatranscriptome	628	Y
F036134	Metagenome	170	Y
F063457	Metagenome	129	Y
F089991	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_1005090892	F036134	AGTAG	MAPTRLWRVVAPHSPEWRETFLRLAAATEEGRDLAPAFDGNLLSFNASAPQDRGALRLVKDLMVQTNFSVEHHACGPMKTYVGDTRMSMTCACGAEIVRRLNG*
INPhiseqgaiiFebDRAFT_1005090893	F089991	AGG	MAKSPPEKKAPPELRVLPMELKLGDRLADERSEWQVIGRPYTTAGGKTAHVRVESLNNPGVTEIRSWGSHERVGVKRDETKGS*
INPhiseqgaiiFebDRAFT_1005090894	F063457	GGA	VLVSYRLRKTGQVRGFAIVLPADADPHLVPTSAVIKCLADASGVAPEEIELLDLWNER*
INPhiseqgaiiFebDRAFT_1005090895	F001831	GAG	VEREVTAGLALFLSACAIANTPQQELAYARWARCNSPAGRLERIDLDGRITFKYSSAGGRQEVLQCLADAGRAGPPLPE