Scaffold ICChiseqgaiiFebDRAFT_11156271

Overview

Basic Information

• Taxon OID: 3300000363
• Scaffold ID: ICChiseqgaiiFebDRAFT_11156271
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 525
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F021376	Metagenome / Metatranscriptome	219	Y
F033892	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
ICChiseqgaiiFebDRAFT_111562711	F021376	AGG	VYLKHLSSLQFLTYISFFAVVMAALFKFVPGRAPPVRETPYPEDELHAHDPKAAKYFLAGGFFLVLGSLHM
ICChiseqgaiiFebDRAFT_111562712	F000280	GGAG	MAEEQRPARPLVGYRDVGGDVRHSRPQMIRSWIILAVLVLLYFGWTLTVYFLEPGLR*
ICChiseqgaiiFebDRAFT_111562713	F033892	N/A	YTTWDTPEQLEAFLDRGYTFERMLADVGLQAEPPRLMEKIF*