NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SL_6KL_011_BRINEDRAFT_1029011

Scaffold SL_6KL_011_BRINEDRAFT_1029011


Overview

Basic Information
Taxon OID3300000361 Open in IMG/M
Scaffold IDSL_6KL_011_BRINEDRAFT_1029011 Open in IMG/M
Source Dataset NameAlkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1767
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location NameRussia: Kulunda Steppe
CoordinatesLat. (o)51.64Long. (o)79.73Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079661Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
SL_6KL_011_BRINEDRAFT_10290112F079661GAGMSTTIQIPTDLRKRLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEIRDMVQRELETVQRH*

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