3300000361: Alkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE

Overview

Basic Information

• IMG/M Taxon OID: 3300000361
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063439 | Gp0054155 | Ga0026667
• Sample Name: Alkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 246640645
• Sequencing Scaffolds: 27
• Novel Protein Genes: 27
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	2
All Organisms → Viruses → Predicted Viral	3
Not Available	18
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Shortaselviridae → unclassified Shortaselviridae → environmental Halophage eHP-28	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → environmental Halophage eHP-11	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Russia: Kulunda Steppe
• Coordinates
  • Lat. (^o): 51.64
  • Long. (^o): 79.73
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F016383	Metagenome / Metatranscriptome	247	Y
F066493	Metagenome	126	Y
F079661	Metagenome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SL_6KL_011_BRINEDRAFT_1011220	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	3715
SL_6KL_011_BRINEDRAFT_1029011	All Organisms → Viruses → Predicted Viral	1767
SL_6KL_011_BRINEDRAFT_1030295	Not Available	1692
SL_6KL_011_BRINEDRAFT_1031185	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Shortaselviridae → unclassified Shortaselviridae → environmental Halophage eHP-28	1641
SL_6KL_011_BRINEDRAFT_1031431	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → environmental Halophage eHP-11	1629
SL_6KL_011_BRINEDRAFT_1034557	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	1485
SL_6KL_011_BRINEDRAFT_1038153	All Organisms → Viruses → Predicted Viral	1351
SL_6KL_011_BRINEDRAFT_1038491	All Organisms → Viruses → Predicted Viral	1340
SL_6KL_011_BRINEDRAFT_1046445	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae	1109
SL_6KL_011_BRINEDRAFT_1054412	Not Available	947
SL_6KL_011_BRINEDRAFT_1058694	Not Available	878
SL_6KL_011_BRINEDRAFT_1059726	Not Available	863
SL_6KL_011_BRINEDRAFT_1066426	Not Available	774
SL_6KL_011_BRINEDRAFT_1067713	Not Available	760
SL_6KL_011_BRINEDRAFT_1074777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae	689
SL_6KL_011_BRINEDRAFT_1075127	Not Available	686
SL_6KL_011_BRINEDRAFT_1077044	Not Available	669
SL_6KL_011_BRINEDRAFT_1078344	Not Available	659
SL_6KL_011_BRINEDRAFT_1080845	Not Available	639
SL_6KL_011_BRINEDRAFT_1082673	Not Available	626
SL_6KL_011_BRINEDRAFT_1084874	Not Available	610
SL_6KL_011_BRINEDRAFT_1085049	Not Available	609
SL_6KL_011_BRINEDRAFT_1085456	Not Available	606
SL_6KL_011_BRINEDRAFT_1086137	Not Available	602
SL_6KL_011_BRINEDRAFT_1089383	Not Available	580
SL_6KL_011_BRINEDRAFT_1090585	Not Available	573
SL_6KL_011_BRINEDRAFT_1094555	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
SL_6KL_011_BRINEDRAFT_1011220	SL_6KL_011_BRINEDRAFT_10112207	F066493	MSQREWHDGVVDVADELVKEYSADGAIDRLQSRRQTSNEQLQARCTEAIAYIRREVMDDT
SL_6KL_011_BRINEDRAFT_1029011	SL_6KL_011_BRINEDRAFT_10290112	F079661	MSTTIQIPTDLRKRLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEIRDMVQRELETVQRH*
SL_6KL_011_BRINEDRAFT_1030295	SL_6KL_011_BRINEDRAFT_10302956	F066493	MSQREWHDGVVDVADELVKEYSADGAIERLQSRRQTSNEQLQARCNEAIAYIRREVLADE
SL_6KL_011_BRINEDRAFT_1031185	SL_6KL_011_BRINEDRAFT_10311853	F079661	MSDTTIQIPTDLRKRLKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIQDVVDRRIESYQRH*
SL_6KL_011_BRINEDRAFT_1031431	SL_6KL_011_BRINEDRAFT_10314316	F003128	MKVEVEVSDVNEKKADHRGRVTLGSEYAGKTVTVAVVEVDD*
SL_6KL_011_BRINEDRAFT_1034557	SL_6KL_011_BRINEDRAFT_10345576	F066493	MTESRREWHDGVVDVADELVKEYSADGAIERLQSRRQTSNEKLQARCNEAIAYI
SL_6KL_011_BRINEDRAFT_1038153	SL_6KL_011_BRINEDRAFT_10381533	F079661	MSDTTIQIPTDLRKRLKEERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDRRIERYQR*
SL_6KL_011_BRINEDRAFT_1038491	SL_6KL_011_BRINEDRAFT_10384913	F079661	MSTTIQIPESVRDDLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDRRIERYQR*
SL_6KL_011_BRINEDRAFT_1046445	SL_6KL_011_BRINEDRAFT_10464452	F079661	MSKTTIELPETVRDDLRDERLPHESNYGDTVRRLLNDATGAQLWTEAEIRDMARDEAESLARGGR*
SL_6KL_011_BRINEDRAFT_1054412	SL_6KL_011_BRINEDRAFT_10544121	F079661	MTEKTTIEVSIDVRDRLKDERLPHESNYSNTIRRLLSDDTGGQIWTEAEIRDMARDEAESLARGGR*
SL_6KL_011_BRINEDRAFT_1058694	SL_6KL_011_BRINEDRAFT_10586941	F016383	MYNKNEQFNYYFNNVPGSGLCRNNLVYTSLIDQKKDTFCQWFYNDKFYHKDQNHILDPSL
SL_6KL_011_BRINEDRAFT_1059726	SL_6KL_011_BRINEDRAFT_10597262	F079661	MSDTTIQIPTDLRKRLKDERLPHESNYGETIGRLLGDSTGGKLWTEQEIKDVVDRRIESYQRH*
SL_6KL_011_BRINEDRAFT_1066426	SL_6KL_011_BRINEDRAFT_10664262	F079661	MSTTIQIPESVRDDLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDXRIERYQR*
SL_6KL_011_BRINEDRAFT_1067713	SL_6KL_011_BRINEDRAFT_10677131	F066493	MSDAREFDTSVVDVADELVQRHGPSGAIDRLQRRRQTSNDELQARCTEAIAWIRREVMDDT*
SL_6KL_011_BRINEDRAFT_1074777	SL_6KL_011_BRINEDRAFT_10747773	F079661	MSKTTIELPETIRDDLRDERLPHESNYGDTIARLLDSDDGGQLWTEAEIRDMARDEAESLARGGR*
SL_6KL_011_BRINEDRAFT_1075127	SL_6KL_011_BRINEDRAFT_10751273	F079661	MSDTTIQLPESTRDKLKDERLPHESNYGDTIERLLGDSTGGQLWTEQEITDVVDRRIELYQR*
SL_6KL_011_BRINEDRAFT_1077044	SL_6KL_011_BRINEDRAFT_10770442	F079661	MNANARHSTSITMSNTTIQIPERLRERLKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIKDLVDQRIERVSQSR*
SL_6KL_011_BRINEDRAFT_1078344	SL_6KL_011_BRINEDRAFT_10783441	F079661	MSTTIQIPTDLRKRLKDERLPHESNYGETIERLLGDSTGGKLWTEQEIKDVVDRRIESYQRH*
SL_6KL_011_BRINEDRAFT_1080845	SL_6KL_011_BRINEDRAFT_10808453	F079661	MSDTTIQIPESVRDDLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDRRIERYQR*
SL_6KL_011_BRINEDRAFT_1082673	SL_6KL_011_BRINEDRAFT_10826732	F079661	MSDTTIQIPTDLRKRLKDERLPHESNYGDTIQRLLGDSTGGQLWTEQEIIDVVDRRIERYQR*
SL_6KL_011_BRINEDRAFT_1084874	SL_6KL_011_BRINEDRAFT_10848742	F079661	MTKTTIELPESTRDKLKDERLPHESNYGDTIERLLGDSTGGQLWTEREITDVVDRRIELYQR*
SL_6KL_011_BRINEDRAFT_1085049	SL_6KL_011_BRINEDRAFT_10850491	F079661	MSDTTIQIPTDLRNRLKDERLPNESNYGETIERLLGDSTRGQLWTEQEIQDVVDRRIESYQRH*
SL_6KL_011_BRINEDRAFT_1085456	SL_6KL_011_BRINEDRAFT_10854562	F079661	MGDTTIQIPESVRDELRDERLPHESNYADTIQRLLGDSTGGQLWTEQELSDLIDQRIERVSQSR*
SL_6KL_011_BRINEDRAFT_1086137	SL_6KL_011_BRINEDRAFT_10861371	F079661	MSTTIQIPESVRDDLKDERLPHESNYGDTIERLLGDPAGGQLWTEQEIRDMIQRELETVQRH*
SL_6KL_011_BRINEDRAFT_1089383	SL_6KL_011_BRINEDRAFT_10893832	F079661	MSQDTTIQIPTDLRKRLKDERLPHESNYGDTIERLLGDPAGGQLWTEQEIRDMIQRELETLQRH*
SL_6KL_011_BRINEDRAFT_1090585	SL_6KL_011_BRINEDRAFT_10905851	F079661	MSDTTIQLPESTRDKLKDERLPHESNYGDTINRLLGSSTGGQLWTEQEIKDLVDQRIERVSQSR*
SL_6KL_011_BRINEDRAFT_1094555	SL_6KL_011_BRINEDRAFT_10945552	F079661	MSTTIQIPESVRDDLRDERLPXESNYGDTIQRLLGDSTGGQLWTEQEIIDVVDRRIELYQR*VIISTGVMKAQIM