Scaffold ElkS_mat_MD6ADRAFT_1000012

Overview

Basic Information

• Taxon OID: 3300000353
• Scaffold ID: ElkS_mat_MD6ADRAFT_1000012
• Source Dataset Name: Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD6A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 50233
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (10.48%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Elkhorn Slough, Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.82188
  • Long. (^o): -121.744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011397	Metagenome / Metatranscriptome	291	Y
F022996	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
ElkS_mat_MD6ADRAFT_100001281	F022996	N/A	METKIITNIAKMKADIKVKAEEQKFLKNQRKDVNLVGERKMSASDATYKHQCNREELRMMYAAYGLARGKSIKQIENQHDEENHPLKQYQKTIDRIMEGYMKIVEVEPQE*
ElkS_mat_MD6ADRAFT_100001290	F011397	N/A	MKDFELLKRTYPVSQFDRICDGYVYICDNTSVEERKEWRINLKDLQKTIKKGEKYIYQVAKDSGMFKAMCLSFNNYRIIRKHIFGIDDE*