Scaffold SR_TP_S2DRAFT_1001075

Overview

Basic Information

• Taxon OID: 3300000351
• Scaffold ID: SR_TP_S2DRAFT_1001075
• Source Dataset Name: Alkaline sediment microbial communities from bioreactor in Germany - Reactor TP_S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7879
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates
  • Lat. (^o): 53.109
  • Long. (^o): 8.845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091594	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
SR_TP_S2DRAFT_100107520	F091594	GAGG	MNEKNITHYCLGTGELKCDGCQQEKNWQTLNEMPDTWRKSAQSRAARIDSTECILTGRPWYAPAEIRQAEEN*