Scaffold WSSedL1CaDRAFT_10007833

Overview

Basic Information

• Taxon OID: 3300000318
• Scaffold ID: WSSedL1CaDRAFT_10007833
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3665
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location

• Location Name: Twitchell Island in the Sacramento/San Joaquin Delta, CA
• Coordinates
  • Lat. (^o): 38.106796
  • Long. (^o): -121.646457
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006047	Metagenome	382	Y
F040436	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
WSSedL1CaDRAFT_100078336	F040436	AGGAG	MGELRILRPRRSLVSIPVVEAVYCESCASVSNSSGGCCGVCGNIPVWPLAELLPQPPRGPYPGSGPASSNPPILQIELLKAA*
WSSedL1CaDRAFT_100078337	F006047	N/A	EPMTIPSLPEWALPPGMTLAQANGLVGDTRGPVDQRLTAEIEGFRGTLGKSIYAEILRRAGHSADARTIPNAERQKQTIEKMKAAARGFERLRQLAEMAGEARFFTAAERFKIALVTELPSLAALKQLVDELESVANQQVA*