Scaffold WSSedL1CaDRAFT_10000258

Overview

Basic Information

• Taxon OID: 3300000318
• Scaffold ID: WSSedL1CaDRAFT_10000258
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 37165
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.53%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location

• Location Name: Twitchell Island in the Sacramento/San Joaquin Delta, CA
• Coordinates
  • Lat. (^o): 38.106796
  • Long. (^o): -121.646457
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087844	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
WSSedL1CaDRAFT_100002585	F087844	N/A	MRKTALLCLVTFTLLLPLSSLHAQGRNIHFFGSYDRSFGNIIASVSSSLVDIQRDEVSKLKDGSVNQFEFGAFFNSFGVGVIHNSYAADATTTYQNNDMNNDGHLENGMLGDKLRLKFTGLEVLYKKAIFDSRFDVLWRMALGIQSYSIDKTFENSENNPSDYYQTLTGSIFTGLIGAGFDYRINKIVSIGIETSVLPGKYKKLKDKNSAGYIYEDNVSRLSTGLKLTLTL*