Scaffold Cc41DRAFT_1016440

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Cc41DRAFT_1016440

Scaffold Cc41DRAFT_1016440

Overview

Basic Information
Taxon OID	3300000301 Open in IMG/M
Scaffold ID	Cc41DRAFT_1016440 Open in IMG/M
Source Dataset Name	CECUM_4-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University College Cork
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1742
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Lumen → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Source Dataset Sampling Location
Location Name	Ireland: Cork
Coordinates	Lat. (^o)	51.897783	Long. (^o)	-8.470613	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076912	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Cc41DRAFT_10164403	F076912	GGA	LEKSTLLCNGKGSNADKVQDSETSLLVSKKADKNYLDDSEGTQKSCLDVVFELLATTAGTSSSNSLPESVRLLESQLQVERHRSDVLRQEAEGLRKSLQNSDAYFLVQQQALEDLSAKQEKVNKLAKHLASIMGTQDIVS*

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