3300000301: CECUM_4-1

Overview

Basic Information

• IMG/M Taxon OID: 3300000301
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0070986 | Gp0052894 | Ga0010789
• Sample Name: CECUM_4-1
• Sequencing Status: Permanent Draft
• Sequencing Center: University College Cork
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73086056
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chicken Cecum Microbial Communities From Ireland
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Ceca → Lumen → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Ireland: Cork
• Coordinates
  • Lat. (^o): 51.897783
  • Long. (^o): -8.470613
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F013656	Metagenome	269	Y
F076912	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Cc41DRAFT_1000427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	55365
Cc41DRAFT_1011406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13423
Cc41DRAFT_1014650	Not Available	791
Cc41DRAFT_1016440	Not Available	1742
Cc41DRAFT_1027818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	30892

Sequences

Scaffold ID	Protein ID	Family	Sequence
Cc41DRAFT_1000427	Cc41DRAFT_100042716	F013656	MNKKIYKEANQFETETNINVLYKEQVISVYTNKVDLQRKLNKVLGEPTKEYKIKRSISGSVWEIPFTDKTKIRNLMLKANIFEL*
Cc41DRAFT_1011406	Cc41DRAFT_101140612	F013656	MNKKIYKEPIKEEMETTINVIYEMEKLCVYTNKVNLQKQLNKLLGEPTKEYKIKRSITGSMWEILFKDKTKISRLILKANIFEL*
Cc41DRAFT_1014650	Cc41DRAFT_10146502	F006329	LKEKLKRIEGEKMELELHVADVVDDHKIKMEKMRLKIRKIRKYAIDSEAWYHYAVGSIVTLVAILIAFVVAFKCFS*
Cc41DRAFT_1016440	Cc41DRAFT_10164403	F076912	LEKSTLLCNGKGSNADKVQDSETSLLVSKKADKNYLDDSEGTQKSCLDVVFELLATTAGTSSSNSLPESVRLLESQLQVERHRSDVLRQEAEGLRKSLQNSDAYFLVQQQALEDLSAKQEKVNKLAKHLASIMGTQDIVS*
Cc41DRAFT_1027818	Cc41DRAFT_102781816	F013656	MIKKIYKEPIKEEMETTINVLYSENKLSLYTNKVDLQKKLNKLLGEPTKEYKIKRSIVGSTWDIPLKEKDKITKIILKANIYEL*