Scaffold Cc41DRAFT_1000427

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Cc41DRAFT_1000427

Scaffold Cc41DRAFT_1000427

Overview

Basic Information
Taxon OID	3300000301 Open in IMG/M
Scaffold ID	Cc41DRAFT_1000427 Open in IMG/M
Source Dataset Name	CECUM_4-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University College Cork
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	55365
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (80.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Lumen → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Source Dataset Sampling Location
Location Name	Ireland: Cork
Coordinates	Lat. (^o)	51.897783	Long. (^o)	-8.470613	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Cc41DRAFT_100042716	F013656	AGGAG	MNKKIYKEANQFETETNINVLYKEQVISVYTNKVDLQRKLNKVLGEPTKEYKIKRSISGSVWEIPFTDKTKIRNLMLKANIFEL*

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