Scaffold EM173_1000340

Overview

Basic Information

• Taxon OID: 3300000274
• Scaffold ID: EM173_1000340
• Source Dataset Name: Human fecal microbial communities from Cork, Ireland - EM173
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42184
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location

• Location Name: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F077313	Metagenome	117	N
F098313	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
EM173_100034011	F077313	N/A	MGKYVIKRKIPKYQDAGEVDPVMPGNVVGLQGLGVEPLVSSTRIGFDIQQPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTKRLNASVLSKAINDSNDTVNGLEGRFTNFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTEERLNYYRTFMPLAYKAYIEAEEGSKAKALQDAIYSNTGSWMTLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPKNKDMSYHDRMRDNKFGQYSSSRPMMALDVVNEEQHKALSDAGITHFSQLFLDDNKDTVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
EM173_100034014	F050794	GGA	MQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKTMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYD*
EM173_100034029	F098313	N/A	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNPCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE*