3300000274: Human fecal microbial communities from Cork, Ireland - EM173

Overview

Basic Information

• IMG/M Taxon OID: 3300000274
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0051660 | Ga0011080
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM173
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69907805
• Sequencing Scaffolds: 15
• Novel Protein Genes: 27
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F050794	Metagenome	145	N
F052660	Metagenome	142	N
F058555	Metagenome	135	N
F059106	Metagenome	134	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F087336	Metagenome	110	N
F089005	Metagenome	109	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F101355	Metagenome	102	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM173_1000113	Not Available	35808
EM173_1000194	Not Available	7871
EM173_1000340	Not Available	42184
EM173_1000350	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	41035
EM173_1000578	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	16607
EM173_1000842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	10652
EM173_1001135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1037
EM173_1002169	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3323
EM173_1002627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3245
EM173_1004796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1389
EM173_1012705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2842
EM173_1016191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	686
EM173_1054689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	508
EM173_1064001	Not Available	527
EM173_1066812	Not Available	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM173_1000113	EM173_100011315	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE*
EM173_1000113	EM173_100011321	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE*
EM173_1000113	EM173_100011322	F089591	MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNESQLPTG*
EM173_1000113	EM173_10001139	F058555	MSGTKITLLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSSKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG*
EM173_1000194	EM173_10001949	F064725	MIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*
EM173_1000340	EM173_100034011	F077313	MGKYVIKRKIPKYQDAGEVDPVMPGNVVGLQGLGVEPLVSSTRIGFDIQQPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTKRLNASVLSKAINDSNDTVNGLEGRFTNFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTEERLNYYRTFMPLAYKAYIEAEEGSKAKALQDAIYSNTGSWMTLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPKNKDMSYHDRMRDNKFGQYSSSRPMMALDVVNEEQHKALSDAGITHFSQLFLDDNKDTVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
EM173_1000340	EM173_100034014	F050794	MQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKTMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYD*
EM173_1000340	EM173_100034029	F098313	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNPCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE*
EM173_1000350	EM173_100035026	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEISVMNIEMNLEVEANVMAGMDDTNFTCLMSEVYKQKAVKAIMMEKDDDEDN*
EM173_1000350	EM173_100035045	F083451	MEEKNVLNLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRKQIKDIIDKESRIMLTRSESLIELMNGSGDEYKFKMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDMFKEEAEMVNETDRSKIEEFNKKLDHD*
EM173_1000350	EM173_100035053	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELIQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLLEKMGVKMKYNAYYCYAATSGIWYSKGFKERLAKRFNRSLSGGGEPFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
EM173_1000578	EM173_100057813	F106193	VGCNTCKEKALKAERERIERSMMNRASSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP*
EM173_1000578	EM173_100057818	F075481	MKRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISKIETMIDEVIDRRMVEIKTSDLNADIIITERKFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK*
EM173_1000578	EM173_100057820	F089590	MTLVMDNKGMLDKIGVLWNIAIAYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTVGEAFPDTYIVKVFKSIFNRVNILKLFGSAKSLPDDAFNDIKKIADEEVKNKS*
EM173_1000578	EM173_100057822	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTFVEFGSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRMHPGPSDMWNYFDINTLPSFEVDKINPNINDFSFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVATYPTENQRPSGTEQAPDGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA*
EM173_1000842	EM173_100084210	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAMLMIKACDDNGSHITTFSFHDKDMDTLRDMVRNSIVISSKRRILLGDGNTAIR*
EM173_1000842	EM173_10008427	F083452	MSGRVKIKSKDKDKKPKIDIFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDMIDKYVKRK*
EM173_1001135	EM173_10011352	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC*
EM173_1002169	EM173_10021693	F080673	MKLQDEALLYLRDNITKDEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASCIGVNMYFRRQDVNAILNNINREKVMGYPYIAIQLDNIQTIEKRRVIFDITGHRMDDNKERIDFMFVYFMARLCV*
EM173_1002169	EM173_10021698	F078006	MIRGQFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPSIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
EM173_1002627	EM173_10026275	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
EM173_1004796	EM173_10047961	F042936	CCVRLMGRGGGKGRAWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKLYFRSRLRGKG*
EM173_1012705	EM173_10127051	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRRSYFFKSFVTEMSIFICMHKCLAQTGRLRSSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
EM173_1016191	EM173_10161912	F087336	MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLGIAFQILPLKSKQKRAP*
EM173_1054689	EM173_10546892	F089005	LTKSKQRSIIALALLRLVTSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI*
EM173_1064001	EM173_10640011	F059106	MHVIAWKIRAILLQIFAWIVDLKARGHLTGYSRKDIKFRQVTIEVHV*
EM173_1066812	EM173_10668121	F050794	YIMQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNERLSDKVGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAERLELDTDAIKDMMRDLLNELKGDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYM