Basic Information | |
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Taxon OID | 3300000273 Open in IMG/M |
Scaffold ID | EM039_1000781 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from Cork, Ireland - EM039 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI), Macrogen |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11188 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
Source Dataset Sampling Location | ||||||||
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Location Name | Cork, Ireland | |||||||
Coordinates | Lat. (o) | 51.907 | Long. (o) | -8.472 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F098313 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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EM039_10007816 | F098313 | AGGAGG | MKEKEFDFVIYPLKLIITIGLYYKTLCDRFENAELDHEGEWGDESDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENNMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE* |
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