Scaffold PBR_1002334

Overview

Basic Information

• Taxon OID: 3300000271
• Scaffold ID: PBR_1002334
• Source Dataset Name: Photobioreactor incubated microbial communities from Hamburg, Germany - Sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Goettingen Genomics Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3434
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Microbial Enhanced Oil Recovery → Unclassified → Unclassified → Photobioreactor Incubated → Photobioreactor Incubated Microbial Communities From Hamburg, Germany

Source Dataset Sampling Location

• Location Name: Hamburg, Germany
• Coordinates
  • Lat. (^o): 53.560526
  • Long. (^o): 10.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082505	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
PBR_10023343	F082505	AGG	MWPFTPRCRQAVVVFHIDQDGIARGAFFRGDADVLIIDERDPKNRIYRMTAESSVEELRRKIGRHPLGSLLEVPRDKERNQTPVLNLHWRSDGVHAG*