Scaffold LP_A_09_P04_10DRAFT_1010801

Overview

Basic Information

• Taxon OID: 3300000265
• Scaffold ID: LP_A_09_P04_10DRAFT_1010801
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1972
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, Station P4
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010460	Metagenome	303	Y
F071137	Metagenome	122	Y
F079203	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_10DRAFT_10108011	F071137	N/A	LIVNLPASETDEFQEWYGLDEEDYSLEQLLEDIEASCSTVNRETTTITTYNDKGERYELNVTGGMTWGDPPTDAYDAFSRAAFFGSIYNLAIDFSVEYSKMYT*
LP_A_09_P04_10DRAFT_10108015	F010460	AGGA	MDNTTIPTHEMIKNLTEFIVDGMTLPELKQFVYDDIYSIMLEDDEVFHAQLESLDMKPEDFAKETD*
LP_A_09_P04_10DRAFT_10108018	F079203	GGAG	MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP*