Scaffold PenaHueca_101311

Overview

Basic Information

• Taxon OID: 3300000245
• Scaffold ID: PenaHueca_101311
• Source Dataset Name: Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Large contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1002
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Salt Crystallizer Ponds → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Source Dataset Sampling Location

• Location Name: Pena Hueca, Spain
• Coordinates
  • Lat. (^o): 39.516667
  • Long. (^o): -3.333333
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072017	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
PenaHueca_1013112	F072017	GGA	MSLNQTPSLESQSDTNVKRIVHQHDEIHAVTQEHIDVLDEDDRLLDFYEWQQIIRASETTVRRLAYAETGVDQ*