NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300000245

3300000245: Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Large contigs



Overview

Basic Information
IMG/M Taxon OID3300000245 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0069917 | Gp0051881 | Ga0011187
Sample NameHypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Large contigs
Sequencing StatusPermanent Draft
Sequencing CenterLifesequencing S.L.
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size3486415
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → environmental samples → uncultured virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Salt Crystallizer Ponds → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline evaporation pondhypersaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationPena Hueca, Spain
CoordinatesLat. (o)39.516667Long. (o)-3.333333Alt. (m)N/ADepth (m).5
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072017Metagenome121Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
PenaHueca_101311All Organisms → Viruses → environmental samples → uncultured virus1002Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
PenaHueca_101311PenaHueca_1013112F072017MSLNQTPSLESQSDTNVKRIVHQHDEIHAVTQEHIDVLDEDDRLLDFYEWQQIIRASETTVRRLAYAETGVDQ*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.