Scaffold TB_PC08_64DRAFT_1009311

Overview

Basic Information

• Taxon OID: 3300000232
• Scaffold ID: TB_PC08_64DRAFT_1009311
• Source Dataset Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_64
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3667
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location

• Location Name: Pozzo dei Cristalli, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034814	Metagenome	173	Y
F081864	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
TB_PC08_64DRAFT_10093112	F081864	AGGAGG	MEADTMQFQASNGQQPRGFGRWGFQIGSETCFIVGKYSVAKQDALRVAKKRGVERVVVLPDKKLAPQGGNPERPENISQEQINNIKTRFMAQAESRTFGKGTKGERVRTVIPTNGLKAAAIMAIFQVDSKRTAHCIAKRGFYIVDYKKQSMCPGEIDIEEAYRISKWWVYKKMGGCLPHWADPEDMVQEAVTRLIERGGDPRMVGESYKFFMVQTAIHRYLRRNRKHEHEDEEKIEAPGSRWGTWDRSYRATETMCRVIEARGAYPMERAA*
TB_PC08_64DRAFT_10093113	F034814	GGAGG	MTSLAAEKTETLPGLHSCFTCADNLGCNLEPRCEFMDGCIKWRCRVCRAPWWTVGYDHEACNATGVPNGVTYHDGTHMAPLPEDSGHYFLHGGYCRVHKSWRCGLLR*