Scaffold TB_AS07_7DRAFT_10023892

Overview

Basic Information

• Taxon OID: 3300000227
• Scaffold ID: TB_AS07_7DRAFT_10023892
• Source Dataset Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- AS07_7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2204
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location

• Location Name: Acquasanta Terme, Italy
• Coordinates
  • Lat. (^o): 42.766667
  • Long. (^o): 13.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000842	Metagenome / Metatranscriptome	865	Y

Sequences

Protein ID	Family	RBS	Sequence
TB_AS07_7DRAFT_100238922	F000842	AGGA	VLDLPGVAGGXTWVQSNAEQERPCLAASSGKDRAYKAGRLKSRGAGRESERSVVAEKARKITRWREGALL*