NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPjun09P161000mDRAFT_c1041594

Scaffold LPjun09P161000mDRAFT_c1041594


Overview

Basic Information
Taxon OID3300000190 Open in IMG/M
Scaffold IDLPjun09P161000mDRAFT_c1041594 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042386Metagenome / Metatranscriptome158N
F099439Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
LPjun09P161000mDRAFT_10415941F099439AGGAGMRQFQVDYETTLPPWRFGHEEIEAEDLDAAKEKFCSKHEAARLLKVYMVNTDNSGK
LPjun09P161000mDRAFT_10415943F042386N/ACQYQEGEKGQFELFHGSTPYLKEGDGVPKFFTLEDVERKLGGLGEY*

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