Scaffold LPfeb10P16500mDRAFT_c1016594

Overview

Basic Information

• Taxon OID: 3300000173
• Scaffold ID: LPfeb10P16500mDRAFT_c1016594
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 673
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F059074	Metagenome	134	N
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
LPfeb10P16500mDRAFT_10165942	F000615	GAG	MCRIRCFYECSDGKLQCAEMVLSYDDDIAGFVKHWKTGGRMVTTEYIEVI*
LPfeb10P16500mDRAFT_10165943	F072760	GAGG	MERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF*
LPfeb10P16500mDRAFT_10165944	F059074	GAG	MEIDLSLNRSLEELVSSYFEAYEAGMMCESFLDVNVDSTAADVSDYYVLENYLSDYGAI*EMKL