Scaffold SI47jul10_200mDRAFT_c1023089

Overview

Basic Information

• Taxon OID: 3300000171
• Scaffold ID: SI47jul10_200mDRAFT_c1023089
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 702
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 47, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076178	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
SI47jul10_200mDRAFT_10230891	F076178	AGGAG	MAIPDNLALGDYNKVTEVASSTTFHATGSNSGAGFIVENATNVVIHCASGGTLDTDQITTKTLYPIGVR