3300000171: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 200m

Overview

Basic Information

• IMG/M Taxon OID: 3300000171
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053396 | Ga0026189
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 200m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100249855
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 47, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027418	Metagenome	194	Y
F030240	Metagenome / Metatranscriptome	186	Y
F032623	Metagenome / Metatranscriptome	179	Y
F035965	Metagenome / Metatranscriptome	171	Y
F046632	Metagenome / Metatranscriptome	151	Y
F048788	Metagenome	147	Y
F052275	Metagenome / Metatranscriptome	143	Y
F074007	Metagenome	120	N
F076178	Metagenome / Metatranscriptome	118	Y
F078263	Metagenome / Metatranscriptome	116	N
F100949	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SI47jul10_200mDRAFT_c1007435	Not Available	1945
SI47jul10_200mDRAFT_c1013675	Not Available	1083
SI47jul10_200mDRAFT_c1020922	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	756
SI47jul10_200mDRAFT_c1021773	Not Available	733
SI47jul10_200mDRAFT_c1023089	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	702
SI47jul10_200mDRAFT_c1023436	Not Available	696
SI47jul10_200mDRAFT_c1024807	Not Available	667
SI47jul10_200mDRAFT_c1027320	Not Available	622
SI47jul10_200mDRAFT_c1028522	Not Available	604
SI47jul10_200mDRAFT_c1029079	Not Available	596
SI47jul10_200mDRAFT_c1031870	Not Available	561

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI47jul10_200mDRAFT_c1000854	SI47jul10_200mDRAFT_10008542	F027418	MFRCNNQYIIDNLHNNIEELTIIRSNLNLDNLPNSIKKLYIESYKKELNNLPNSIEYLELENYNLKIKKFPKNLKTIKCVNNYKYIDDFKDYEVIYH*
SI47jul10_200mDRAFT_c1004504	SI47jul10_200mDRAFT_10045041	F027418	LTFGWKFNQEIFIPLNIKSLNMCCCNNQYLIDNLHNNIEELIIVQTNLNLDNLPNSIKKLHIEDYNKELNNLPNSIEYLKLINYYLKIKKIPKNLKTVKCDKKYKYIDDFKDYKVIF*
SI47jul10_200mDRAFT_c1005667	SI47jul10_200mDRAFT_10056672	F027418	MCWCNNQYLIDNLHNNIEELIIVQTNLNLDNLPNSIKKLHINYYKKELNNLPNSIEYLELTNYKLKIRKIPKNLKTVKYDRYYKYIDDFKDYKVIIY*
SI47jul10_200mDRAFT_c1007435	SI47jul10_200mDRAFT_10074353	F048788	MENNYWIVDGWLIFKPEFNEELTNYYGIINKYKKIMFSNYKDPSIAIKTNNKYSNNLIQSKFNQEIDLSNNVNLTHLTFGE
SI47jul10_200mDRAFT_c1013675	SI47jul10_200mDRAFT_10136751	F048788	MENNHWIVDDWLIFKPKFNEELINYYDIINKYKKIMFSNYNNPLIAIETNNQYEREYHGNWIKSNFNPEIDLSNNINLTHLTLGSKFNQMIDLSNNINL
SI47jul10_200mDRAFT_c1020922	SI47jul10_200mDRAFT_10209221	F078263	MEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVTDKHNDLISKINGISSRVDNLEEKIEL
SI47jul10_200mDRAFT_c1021773	SI47jul10_200mDRAFT_10217731	F032623	LTMTENIWIWVLIYSMPLTAVIWFLGMWATHEDYKKEHNIKGWSDKEMNAKQIILTSIVSTIVGTTGWLGGVYYGSANMFETIYDNVGNELDLLGKKLDSESTKKIESQIEQLKQRVLNKVPSQQDIIDMSAQVDEINERIVVLASETQGLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTTIIDKAKNTFFGKSVFKEKK*
SI47jul10_200mDRAFT_c1023089	SI47jul10_200mDRAFT_10230891	F076178	MAIPDNLALGDYNKVTEVASSTTFHATGSNSGAGFIVENATNVVIHCASGGTLDTDQITTKTLYPIGVR
SI47jul10_200mDRAFT_c1023436	SI47jul10_200mDRAFT_10234363	F035965	SNLDYLIKKFDGVLIDEYDWEHYKVDGKDYDIRFDRSRIEWACDCKAFTFRHKFKTKYCKHILEVQDNRFSKKHKQGV*
SI47jul10_200mDRAFT_c1024807	SI47jul10_200mDRAFT_10248073	F030240	MADAGTMFRSLPTDQKLGDYNGITKVLSSTTVEFTGSNAGAAFIVENTTNVVVHGSGGGTLPSTVLNTKTLYPIGVNKVVIGETGVVYV
SI47jul10_200mDRAFT_c1027320	SI47jul10_200mDRAFT_10273201	F100949	MISDVKKINYVKRIYKRTPDKYLNLSEIEGWPRDEDWMNDEPHLNHGKMRRRGTVCPCVYEKYSEVTNRAIVNYISELLESEISIVLSIVDVEGVKSMIDGVHTALAYDKLGITEVPVYINSKSLPFGVCYKD
SI47jul10_200mDRAFT_c1028522	SI47jul10_200mDRAFT_10285221	F046632	DGDGVRNIAKLXGKKXQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQIVNNFKVKTAHFFKLKLKIAQTEKEASLYP
SI47jul10_200mDRAFT_c1029079	SI47jul10_200mDRAFT_10290791	F074007	LDYFKYRFKPDKKFYIIFEEEEFSTHTVLDLDMVVEFFKENGVDKDKLIWVTASHNFNDVLKRFNKYIEVKPIPLHWGDSRFMKEDTVKSIVKDKIINYDVKSFGFNSSFYNLKYITDENFLSEIKTENPPSKLFCCPMGLKKISRLNLLQKLYDRKFIKDLDKIDDDDLGWVSLNSEKRIFKDDIFLYFKGYIEVGG
SI47jul10_200mDRAFT_c1031870	SI47jul10_200mDRAFT_10318701	F052275	LSTTSKYKCHACGYSAQVWNAPDKAPIATVDTRHCLGCKSLVEVPIEFHGAGLIGDPDVVPSFLNRCPDCNSSNVQPWNVRHGCPK