Scaffold LPaug08P2610mDRAFT_c1010902

Overview

Basic Information

• Taxon OID: 3300000159
• Scaffold ID: LPaug08P2610mDRAFT_c1010902
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N
F086834	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_10109021	F086834	N/A	MVMCEWTLADVKNRASNKAFAKQTILKLDIESYKQELK
LPaug08P2610mDRAFT_10109022	F005817	N/A	MRSNLLSRLKPEFKQGLEDNKTRYPASIHDLEFVLGQLTFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
LPaug08P2610mDRAFT_10109023	F082713	N/A	MEKLELTTEDCAFVYYVLRDWSQKHSNYDEQDVDKVYQIAKKFKMY*