Scaffold LPaug09P1610mDRAFT_c1000014

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1000014
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 34641
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (20.69%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040861	Metagenome / Metatranscriptome	161	N
F048411	Metagenome	148	Y
F049943	Metagenome	146	N
F056151	Metagenome / Metatranscriptome	138	Y
F062174	Metagenome	131	N
F090879	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_100001416	F090879	N/A	MEQLNTLTLSQSEESMDFSLHDHYTERIKYHMTMLNYYLKEEKHDRMGD*
LPaug09P1610mDRAFT_100001429	F049943	N/A	MYKFKTKYKSCFTAIDELQYVRQGDSPPSPYKDNAPREKQANYNFSIVSPVSSGKYIPVNSYQLTGKGVSTKAKIYNEYDQYNNDLVDGHTVFGKIDNYAKRRLFKKDKVIYDLIY*
LPaug09P1610mDRAFT_100001435	F062174	AGAAG	MTKTMIDPKITKDLDNYLSYHRKLKRMKELMGGEYRMEMNVESCRPLIEDGFDLSDIVEYFILELRDYTDNRYMDDIRRLKEMEAEKAEANDA*
LPaug09P1610mDRAFT_100001437	F048411	N/A	MRIQIDWSDGTYTFKHGNKIVTKSTLQNKKVCDNITNEINEMFKQLEI*
LPaug09P1610mDRAFT_100001446	F040861	N/A	MLETLKPIKTTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGEYYKEDNEIGDRLYQINSREEMNREYDYDGVKKTISGIARVKYNDISEAINALQNFNNKNCGEYAVELRKNKILEQYEEHKALNIKSYLTKERVKEADTYVEGYNEGYNEGFTEGVASIEDKLNKLLNNL*
LPaug09P1610mDRAFT_100001452	F056151	N/A	MQKLYTKHYKSQILNTKKIKLNNKIYIGFNINDLQNIKLKDKLTLNNVIEFNLKGLTFINKNNIQKSTLQFI*