Scaffold SI53jan11_10mDRAFT_c100064

Overview

Basic Information

• Taxon OID: 3300000143
• Scaffold ID: SI53jan11_10mDRAFT_c100064
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5824
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 53, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103879	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
SI53jan11_10mDRAFT_1000641	F103879	N/A	INVVLSTQMTEMNPLPFTKETVYHANAATLVTWGIFDLLSEIAFFKQTNRKLQGTSEIILGMETCYDTYAHEFAEQLGDRFSPLGWDSQLERVQAGIDQVNPESRLMTHFRRLTQKNKETVGVGKSWVQVTQSGLSRIVESRGDLKRDRQREARFSLRNWSYRQEFALARRTLYWRERGQMRFHSSQYNMMNVTSIDHNQNSRLTRLYFRDMLIESRQKRALRVSIEPTIYDTFATRKLVVRARKPVAEASQLLAGDLLHVWFDWAKTYSNL*