Scaffold SA_S1_NOR05_45mDRAFT_c10065800

Overview

Basic Information

• Taxon OID: 3300000127
• Scaffold ID: SA_S1_NOR05_45mDRAFT_c10065800
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 881
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.237209
  • Long. (^o): 15.677776
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F082713	Metagenome / Metatranscriptome	113	N
F086834	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR05_45mDRAFT_100658002	F082713	N/A	MKIKGLTEQDCAFVYYVLRDWSQNHEXYXEQDVDDVYEIAKKFKNN*
SA_S1_NOR05_45mDRAFT_100658003	F005817	N/A	MRSSLLSRLKPEFKQGLEDNKTRYPASIHDLEFLLSQLTFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
SA_S1_NOR05_45mDRAFT_100658004	F086834	N/A	MVMCEWTLADVKNRASNKAFAKQTILKLDIESYKQELKNGTYGGI