Scaffold DelMOWin2010_c10042660

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10042660
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2077
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F071183	Metagenome	122	N
F077238	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100426605	F071183	N/A	MKMNETLKHEFKATNDGDAWGNCMQWLFAICDYLTFETDEGVPSEWQFKPSMGGANEDCFCYQSLRHFAFEKFITNQDVLEFGKVLIRLRDILEYKGLSY*
DelMOWin2010_100426607	F008547	GGA	MSVTIYLTDHNGRKIAFFYRIDNERYLTCPQLLWSCRDHPEYQGTAESKEHFMEQCKGVIKMINRNLPVCKECGLTSPKMESQSTCPDCLTEPTTNK*
DelMOWin2010_100426609	F077238	N/A	MTSTNPSDLSTLDEPSLEHLIQYYLKLKHRMPHNLRVRDRLVELQQELLNRNTTTNEK*