Scaffold DelMOWin2010_c10041519

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10041519
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2118
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016739	Metagenome / Metatranscriptome	245	Y
F042579	Metagenome	158	N
F044160	Metagenome	155	N
F098083	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100415191	F016739	N/A	MRLNGGLLSSGTSEWVRLRRAWRKWNESCHPDDQIDWIEFLEEHS*
DelMOWin2010_100415192	F044160	N/A	MVKFWTLLSGTSYIASISNPSYTQNPFCAVKYESIKKADVAANEWKRKYGLPVMVHVILEHDLTRYCSQDDYEDQAHSAFYSENL*
DelMOWin2010_100415195	F042579	N/A	MKKFNAFEKGLIVDALNYYVANLEAEVEEASGDGVTIVAPGFYTMAKNELIDKVESMTKKFK*
DelMOWin2010_100415197	F098083	N/A	MIHFWVKLLSFILTGYFVSVGNWESAALFFMVYLGELCGSICESIENKEL*