Scaffold DelMOWin2010_c10040590

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10040590
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2154
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027054	Metagenome / Metatranscriptome	196	N
F049006	Metagenome / Metatranscriptome	147	N
F093905	Metagenome / Metatranscriptome	106	N
F100982	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100405903	F027054	N/A	MTKQKKETSRHWTVELNIGSKRNMGKLKHSKSSGYRYAYHDLNHVRKKVENRFDGGSGNIIKAMFEFDGTYNDEIEKSFYIAFSFYGYIETFKDDDGVEVEYMTLADRKILEDKLTILCMELEQECIGYNIKEWTSSTFYPTGKQDLIYHPNYEGEQMIFEDEYFMTFGYHKLSSFEKLHTV*
DelMOWin2010_100405904	F049006	N/A	MTKFEFIDVCSRHGVDQWIVMDDLLLSGKQHPHDLTVNDLNEFMWSTY*
DelMOWin2010_100405905	F093905	N/A	MKHISKKEFNDFYTIMKNNSDKSVLEVYNLYKSLRANNLMPKELISNKIK*
DelMOWin2010_100405906	F100982	N/A	MYINFKQIDKLEQIVDSIACSNIDTDTFKCLNENQRSYLRNEIVRTLDTMLNLD*