Scaffold DelMOWin2010_c10019230

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10019230
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3598
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005325	Metagenome	404	Y
F054048	Metagenome / Metatranscriptome	140	N
F100032	Metagenome	103	N
F105091	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100192303	F100032	GAGG	MGVAVDLKKEEFIGQGFSKKEALTKALEWCQQTNTCRGCSQAVKPGEWSKSFKVRATV*
DelMOWin2010_100192304	F054048	AGGA	MTNINDIIKPLNKIADTLDEVLTLVKKDMEDNKARITAQWDNELDKKEVVKSDENFNYSQLELPFPEVE*
DelMOWin2010_100192307	F005325	AGGAGG	MKRKIKRGDLLPWFLEDHDTLPAWYIKDCQEFFEWLKQSNKDRKKLN*
DelMOWin2010_100192308	F105091	GGAGG	MALQYDYTNIDCSSWSKEDHDIAHGFCWTLMAVEMQDVTEKNWKEILFRILYLQKVGHGPWTEDQEPKVIIQWLKKLIGYGTNVGEKSRAKWLRARTNYIASDVENKLVYSLKELELQE*