NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOWin2010_c10014341

Scaffold DelMOWin2010_c10014341


Overview

Basic Information
Taxon OID3300000117 Open in IMG/M
Scaffold IDDelMOWin2010_c10014341 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4356
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. PW1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008547Metagenome / Metatranscriptome331Y
F012662Metagenome / Metatranscriptome278N
F054010Metagenome140Y
F068603Metagenome124Y
F077238Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
DelMOWin2010_1001434110F077238N/AMTSTDPSDLSTLDEPSLQTLIDHYLSVAEKLPDNLTVRDRLVELQQELLKRTTTNE*
DelMOWin2010_1001434112F012662GAGMKELLLQPADMIEELMYHILWNEFDGELDPDHKYFPLYLSLQQLLEDETRRLEE*
DelMOWin2010_100143414F054010N/AMLDNCSNTNLPVIRIVSTEDEMFTKLNLEMEDSTHDMLVKWGKERATDEDYISVALRCGLEEYLESIKEKS*
DelMOWin2010_100143416F068603N/AMKQIKLINKLPTASDQIDKEVDKLFTQAPLEKLVPFILLGFWIAILFAIFSS*
DelMOWin2010_100143418F008547GAGMNALERSDMSVTIYLTDHNGRKISFFYRIDNERYLTCPQLIWCCKEYREYQGTAESKEDFIEQCKGVIKMINRSLPVCKDCGLTSAKMEAQDACPECLTEPNTNK*

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