Scaffold DelMOWin2010_c10011320

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10011320
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5014
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F012285	Metagenome	282	Y
F013522	Metagenome	270	Y
F056889	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1001132012	F013522	GGA	MKKENILKRIEQLSKLCEETEPTFNEMMNMDKLFTQDLISVDNMYLQVEQDEYSPQDLIDIMKECNWIWKKRNKIKEVGWNEYNNIDRKIEEAVRAGRKIEAIKTYRKHKIDNGEDCGLKEAKVYIDKVSIKLGLD*
DelMOWin2010_1001132013	F002249	N/A	YTVPINHKALQHTKIKELQVRMMKWISWYKDEKIRNRTVDKDKWQHRFQFTLRCQERTGKLTKGELQQLNHYWKVYEEGKHT*
DelMOWin2010_100113207	F056889	N/A	MKNLSNEEQITLILIGIAIGIGLGFLIKVFIDTHILLQNF*
DelMOWin2010_100113209	F012285	AGGAG	MYHNDSKSFLLFGQQMNQIIAILQMVSDKNPDIQKLNDFIQHLKDMVPYEDMLDSFVFGDQETMPDGVRPVGSRDAMTLEEMMDDLQLRFMDARDKDNGKN*