Basic Information | |
---|---|
Taxon OID | 3300000117 Open in IMG/M |
Scaffold ID | DelMOWin2010_c10003573 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9690 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (64.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011679 | Metagenome / Metatranscriptome | 288 | Y |
F011848 | Metagenome / Metatranscriptome | 286 | Y |
F026890 | Metagenome / Metatranscriptome | 196 | Y |
F054080 | Metagenome / Metatranscriptome | 140 | Y |
F071254 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
DelMOWin2010_1000357314 | F011848 | GAG | MSNKTPYEIRLDLVREAKEILQARAKNPEDMPTTEEVLKEAERLNEFVSKRPFNESK* |
DelMOWin2010_1000357321 | F071254 | AGTAG | MKKKNTTPKTRSHRDLFVHDTPYGHKVERDRTKIIPRKQKHKEV* |
DelMOWin2010_1000357323 | F054080 | N/A | LIKEALKAVIGVGKQGTQFKITPLRIVLFALLVAIIFLGTVTALLFLASVLV* |
DelMOWin2010_100035734 | F011679 | GGAGG | MIKDRNTTVLSKDVQPTESLKRFIERCTGAKMTPVKGNDNAFWISGDKRGDYYEQKYYKIVFGSVTQVSYTPNRTEKSGYGFDIQTVGDLNGWQLMGEYRKMIKEEMANYKEKQLESA* |
DelMOWin2010_100035735 | F026890 | AGGAG | MQYNIYQIQVSDEITDFVNSNEGGHYEAAKKYPLYHAKMETMHARGDSDKIDFKQEYFSHYTKVCEVDGRYCGLSDGDRDYTVTSKNEVFSILNQCYLDEETGEDIVFDNHVSNYVMKTITRKNGEQVTYRDMHSLSVGDIIAEQPQVGYEVMDIDDIIPNTRYFIVESYGFTDITDIIQDIDIAVNRIAEAV* |
⦗Top⦘ |